o
     Ad%                     @   s   d dl mZ d dlmZmZmZ ddlmZmZm	Z	 d dl
mZmZmZ d dlZd dlZd dlZd dlZd dlZddlmZ dd	 Zd
d Zdd Zedddd Zedddd Zedd Zedd ZdS )    )login_required)renderredirectget_object_or_404   )newDatasetFormEditDatasetForm	LabelForm)process_file	plot_umapplot_searchN)Datasetc                 C   s
   t | dS )Nzdataset/edit.html)r   )request r   "/home/tommy/Atlas/dataset/views.pytest   s   
r   c              	   C   sB   t t|d}|jj}t|}t| |\}}t| d|||||dS )Nidzdataset/detail.html)datasetumap_fig_dataumap_search_dataform	file_path)r   r   datapathr   r   r   )r   
dataset_idr   r   r   r   r   r   r   r   detail   s   r   c                 C   s   || }| | j |k S )N)cluster)markerscluster_numberupdated_cluster_namescluster_namer   r   r   filter_by_cluster&   s   r"   z/login/)	login_urlc                 C   s4  t t|d}t|j}|jj}t|}t| |dd\}}|jj}t	|}|j
d jj }	|jd }
t|
 |jd }|	 }t| j}t| j|d}| jdkrd	| jv r| r|jd
 }t| jd}|jd }|dkr|t|k r|||< ||
|< |d| |
|jd< | jj}| d|j d}|d|  ||_|  t|}d| jv r| r| jj}| d|j d}|d|  ||_|  nt }G dd d}||}t !d|j"f}|d j#j$D ]=}t %|d | |d | |d | |d | t j&|gt|d |  ddfj'}|j(d dkr|}qt %||f}qt)j*|dd  g dd}||j+dk t,|j-dk@  }|ddg  }|d .t/|d< t0|D ]\}}||j1|d t/|kdf< qWg }|D ]}t)*t2|||3d }|j4d!d"}|5||f qnt6| d#||||||||d$S )%Nr    )queryleidenleiden_colorsrank_genes_groupsinstancePOST
save_labellabelr   colorr   _z.h5adzmedia/save_descriptionc                   @   s   e Zd Zdd ZdS )zlabel.<locals>.ZeroArrayObjectc                 S   s$   t |d jj| _t| j| _d S )Nnames)lendtyper1   array_lengthnpzeros
zero_array)selfresultsr   r   r   __init__j   s   z'label.<locals>.ZeroArrayObject.__init__N)__name__
__module____qualname__r:   r   r   r   r   ZeroArrayObjecti   s    r>   r1   scores	pvals_adjlogfoldchangesobject)r3   r   )Gener?   pval_adjlfcr   )columnsg?rC   r   
   F)indexdataset/label.html)r   r   r   
label_formsearch_formdescription_form
table_datar    )7r   r   rangecluster_countr   r   r   r   screadobscat
categoriestolistunsprintcopyr	   r+   r   methodis_validcleaned_dataintgetr2   rename_categoriesuserusernamenamewritesaver5   emptyr4   r3   r1   vstackarrayTshapepd	DataFramerD   absrE   astypestr	enumeratelocr"   headto_htmlappendr   )r   r   r   clustersr   r   rK   r   processed_datacluster_namescluster_colorsr9   r    rJ   rL   	new_labelr   	new_colorusername_prefix	h5ad_filer>   objoutgroupgroup_arrayr   filtered_markersupdated_namerM   filtered_clusters_subset
table_htmlr   r   r   r-   ,   s   














r-   c                 C   s   | j dkr[t| j| j}| rZ|jdd}| j|_| jd }|j}t	j
dd|}t	j|dd t|d	}|| W d    n1 sGw   Y  ||_|  td
|jdS nt }t| d|ddS )Nr+   F)commitr   mediadatasetsT)exist_okrdataset:dataset_labelr   zupload.htmlzNew dataset)r   title)rY   r   r+   FILESrZ   rc   r_   
created_byra   osr   joinmakedirszipfileZipFile
extractallr   r   r   r   )r   r   r   uploaded_filedataset_namedataset_dirzip_refr   r   r   new   s*   

r   c                 C   s    t t|| jd}|  tdS )N)pkr   z../../../dashboard/)r   r   r_   deleter   )r   r   r   r   r   r   r      s   r   c                 C   s\   t t| jd}| jdkr#t| j|d}| r"|  td|j	dS nt }t
| dd|iS )N)r   r+   r)   r   r   rI   r   )r   r   r_   rY   r   r+   rZ   rc   r   r   r   )r   r   r   r   r   r   edit   s   
r   )django.contrib.auth.decoratorsr   django.shortcutsr   r   r   formsr   r   r	   
base.viewsr
   r   r   scanpyrP   pandasri   numpyr5   r   r   modelsr   r   r   r"   r-   r   r   r   r   r   r   r   <module>   s,    
 
$
