U
    md!                     @   s.  d Z ddlZddlZddlZddlmZ ddlmZ ddl	m
Z
 ddl	mZ ddl	mZ ddlmZmZmZmZ dd	lmZ dd
lmZ ddlmZ ddlmZ d(ddZdd Zdd Zdd Zd)ddZej ddddgdd Z!ej ddd ge"d!fdd ge"d!fd"d ge#d#fgd$d% Z$d&d' Z%dS )*z" Test the graphical_lasso module.
    N)linalg)assert_allclose)assert_array_almost_equal)assert_array_less)_convert_container)graphical_lassoGraphicalLassoGraphicalLassoCVempirical_covariance)make_sparse_spd_matrix)StringIO)check_random_state)datasetsc                 C   st  d}d}t | } t|d| d}t|}| jt|||d}t|}dD ]}t }t }	dD ]R}
t	|d||
d	\}}}|||
< ||	|
< t
|j\}}|d
ks^tt|d
 q^t|d |d dd t|	d |	d dd qJtdd|}|| t|j|d dd t|j|d dd ||d
 }t }dD ]"}t|d|j}|| q:t|d
 |d  d S )N   d   gffffff?alpharandom_statesize)        皙?      ?cdlarsT)return_costsr   moder   r   r      decimalr   )r   )FT)assume_centered   )r   r   r   invmultivariate_normalnpzerosr
   dictr   arrayTr   diffr   r   fitZscoreZcovariance_meanlistZ
precision_append)r   dim	n_samplespreccovXemp_covr   ZcovsZicovsmethodZcov_Zicov_ZcostsZdual_gapmodelZZprecsr!   Zprec_ r8   f/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/sklearn/covariance/tests/test_graphical_lasso.pytest_graphical_lasso   sD    
   
r:   c               	   C   s   t ddddgddddgddddgddddgg} t d	dd
dgddddgd
dddgddddgg}t j}t|}dD ],}t|dd|d\}}t||  t|| qzd S )NgJSo?r   gڧ1?g{!<?g-ꊾ'?g[@gο]?dw?glE!N?g',g5Ry;2@ggC%d?gXIſgv?r   g      ?Fr   r   r   r%   r(   r   	load_irisdatar
   r   r   )cov_Ricov_Rr3   r4   r5   r2   icovr8   r8   r9   test_graphical_lasso_irisE   s(    

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

rC   c                  C   s   t ddgddgg} t ddgddgg}t jd d dd f }t|}dD ],}t|d	d
|d\}}t||  t|| qRd S )Ng@gHZ?r;   gɉ1t?gO{̓%	g4#(#e @   r   r   Fr<   r=   )Z	cov_skggmZ
icov_skggmr3   r4   r5   r2   rB   r8   r8   r9   test_graph_lasso_2D`   s    
rE   c               	   C   s   t dd} t ddddgdddd	gd
dddgdddd	gg}t ddddgddddgddddgddddgg}t j| d d f }t|}dD ]4}t|dd|d\}}t||dd  t||dd  qd S )!N
      g{Gz?gt<i?gb?gHWY?gիr?gH紁Nk?gۨxV4b?gb?g`ܴNk?gR*贁N{?gLgם?g:glWY?gExV4b?gR%l8@g,0r   g0gCKZ8@gg      )gTs gGrO#c@gm>(g     |@r   g{Gz?Fr<      r   )	r%   Zaranger(   r   r>   r?   r
   r   r   )indicesr@   rA   r3   r4   r5   r2   rB   r8   r8   r9   "test_graphical_lasso_iris_singularn   s4    

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
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   
rJ   r"   c                 C   sr   d}d}t | } t|d| d}t|}| jt|||d}tj}z t	 t_t
dddd| W 5 |t_X d S )	NrH      gQ?r   r   r   r   )verbosealphastol)r   r   r   r#   r$   r%   r&   sysstdoutr   r	   r+   )r   r/   r0   r1   r2   r3   orig_stdoutr8   r8   r9   test_graphical_lasso_cv   s    
rR   alphas_container_typer-   tupler(   c              	   C   s|   t ddddgddddgddddgddddgg}t jd}|jddddg|d	d
}tddg| }t|ddd| dS )zCheck that we can pass an array-like to `alphas`.

    Non-regression test for:
    https://github.com/scikit-learn/scikit-learn/issues/22489
    皙?r   皙?皙?333333?r   ffffff?r      r,   r2   r   g{Gz?Q?r"   rM   rN   Zn_jobsN)r%   r(   randomRandomStater$   r   r	   r+   )rS   true_covrngr3   rM   r8   r8   r9   'test_graphical_lasso_cv_alphas_iterable   s    



rb   zalphas,err_type,err_msgg{Gzr\   zmust be > 0Z
not_numberzmust be an instance of floatc              	   C   s   t ddddgddddgddddgddddgg}t jd}|jddddg|d	d
}tj||d t| ddd| W 5 Q R X dS )zCheck that if an array-like containing a value
    outside of (0, inf] is passed to `alphas`, a ValueError is raised.
    Check if a string is passed, a TypeError is raised.
    rU   r   rV   rW   rX   r   rY   r   rZ   r[   )matchr"   r]   N)	r%   r(   r^   r_   r$   pytestZraisesr	   r+   )rM   Zerr_typeerr_msgr`   ra   r3   r8   r8   r9   ,test_graphical_lasso_cv_alphas_invalid_array   s    



rf   c               	      s"  d} d}d}t ddddgddddgdddd	gddd	d
gg}t jd}|jddddg|dd}t| ||d|  j}|| d }dg}dd t| D }	||	 D ]$}
|
|kst	t
||
 |kst	qt  fdd|	D }|jdd}|jdd}t jd | t jd | d S )Nr   rH      rU   r   rV   rW   rX   r   rY   r   rZ   r[   )ZcvrM   n_refinementsr"   rM   c                 S   s   g | ]}d | dqS )splitZ_test_scorer8   ).0ir8   r8   r9   
<listcomp>   s     z2test_graphical_lasso_cv_scores.<locals>.<listcomp>c                    s   g | ]} j | qS r8   )cv_results_)rj   keyr2   r8   r9   rl      s     )ZaxisZmean_test_scoreZstd_test_score)r%   r(   r^   r_   r$   r	   r+   rm   rangeAssertionErrorlenZasarrayr,   Zstdr   )ZsplitsZn_alphasrh   r`   ra   r3   Z
cv_resultsZtotal_alphaskeysZ
split_keysrn   Z	cv_scoresZexpected_meanZexpected_stdr8   ro   r9   test_graphical_lasso_cv_scores   s6    



rt   )r   )r"   )&__doc__rO   rd   numpyr%   Zscipyr   Znumpy.testingr   Zsklearn.utils._testingr   r   r   Zsklearn.covariancer   r   r	   r
   Zsklearn.datasetsr   ior   Zsklearn.utilsr   Zsklearnr   r:   rC   rE   rJ   rR   markZparametrizerb   
ValueError	TypeErrorrf   rt   r8   r8   r8   r9   <module>   s:   
+ 


