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    md                     @   s   d dl mZ ddlmZ ddlmZ ddlmZ ddlm	Z	 ddl
mZmZmZmZ ddlmZmZ dd	lmZ dd
lmZ ddlmZ ddlmZ ddlmZmZ ddlmZ ddlm Z  ddl!m"Z" ddl#m$Z$m%Z% dS )   )pca   )tsne)umap)diffmap)
draw_graph)pagapaga_degreespaga_expression_entropiespaga_compare_paths)rank_genes_groupsfilter_rank_genes_groups)dpt)leiden)louvain)sim)score_genesscore_genes_cell_cycle)
dendrogram)embedding_density)marker_gene_overlap)ingestIngestN)&Zpreprocessingr   Z_tsner   Z_umapr   Z_diffmapr   Z_draw_graphr   Z_pagar   r	   r
   r   Z_rank_genes_groupsr   r   Z_dptr   Z_leidenr   Z_louvainr   Z_simr   Z_score_genesr   r   Z_dendrogramr   Z_embedding_densityr   Z_marker_gene_overlapr   Z_ingestr   r    r   r   N/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/scanpy/tools/__init__.py<module>   s   