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    md                     @   s   d dl Z d dlZd dlZd dlmZ d dlmZ d dlm	Z	 d dl
mZ d dlZd dlmZmZmZmZmZmZ eejjZdd Zdd
dZdd ZdddZdS )    N)
coo_matrix)connected_components)combinations)rejection_sample	make_heapdeheap_sortsimple_heap_pushhas_been_visitedmark_visitedc                    s  t jt j | j| jj| jj| jtj	ddtj
jd d d tj
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jd d d tj
jd d d tj
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jdd fdd}|S )NT   )current_queryijheap_prioritiesheap_indices	candidatevertexdd_vertexvisitedindicesindptrdataZ	heap_sizedistance_scaledistance_boundZ
seed_scale)ZfastmathZnogillocalsc                    s  t | jd |}d| }t| jd D ]}d|d d < ksH krxt| | d  }|dkr&| | | }	qq&n| | }	|d | }
|d | }dd tdD }|jd }t|D ]H}t|| }| |	}t|
||| t	|||f t
|| q||
d  }t|\}}||k r&t| |d  D ]j}| }t||dkr>t
|| | |	}||k r>t|
||| t	|||f ||
d  }q>t|dkrq&nt|\}}q q&|S )Nr   g      ?           r   c                 S   s"   g | ]}t t jt d fqS ))npfloat32infint32).0r    r$   P/home/sam/Atlas/atlas_env/lib/python3.8/site-packages/pynndescent/graph_utils.py
<listcomp>I   s     zJcreate_component_search.<locals>.custom_search_closure.<locals>.<listcomp>)r   shaperanger   sqrtsumr"   r   heapqheappushr
   heappopr	   len)query_pointscandidate_indiceskepsilonr   resultr   r   Znormr   r   r   Zseed_setZn_initial_pointsr   r   r   r   r   r   alternative_cosinealternative_dotr   distr   r   r$   r%   custom_search_closure!   sR    


   z6create_component_search.<locals>.custom_search_closure)
pynnd_distr6   r5   	_raw_dataZ_search_graphr   r   Z_distance_funcnumbaZnjittypesr    Zuint32r"   Zuint8Zint16)indexr8   r$   r4   r%   create_component_search   s<    ?r>   
   r   c                 C   s  dd t dD }| tt|| jd | |d< |tt||jd | |d< d}	|||	  }
|d|	   }ddg}tj}|d d |d d f}|d s|d r||
||||\}}}t||\}}t |jd D ]L}t |jd D ]8}|||f |k r|||f }||	 | |||f f}qq||	 }t|d d df }|d|	  jd |jd krt	|d|	  |k|d|	 < ||d|	 < ||d|	   }
d|	 }	q|d |d |fS )Nc                 S   s   g | ]}t jd t jdqS )r   Zdtype)r   Zzerosint64)r#   r   r$   r$   r%   r&      s     z2find_component_connection_edge.<locals>.<listcomp>r   r   r   T)
r(   r   r   rA   r'   copyr!   r   uniqueany)
component1
component2search_closureraw_datar   	rng_statesearch_sizer2   r   Z
query_sider/   r0   changedZ	best_distZ	best_edgeZindsdists_r   r   Znew_indicesr$   r$   r%   find_component_connection_edge{   sF    
    

rN   c                 C   s   t | jd | jd ftjd}t||dk< ttj| jd tjd| jd |_| 	 |_
|	 |_| }d|j|jdk< |  ||j}|S )Nr   r@   r   r   r   )r   r'   r   r    FLOAT32_EPSrepeatZaranger"   rowZravelcolr   tocsrr   Zeliminate_zerosmaximumT)Zneighbor_indicesZneighbor_distancesr3   r$   r$   r%   adjacency_matrix_representation   s       

rV   c           
         s   t t| \} |  } j   fddtj|ddfddtt|dD }|D ]"\}}}	|	|||f< |	|||f< qf| S )Nc              	      sx   t  | kd }t  |kd }t||jjjd\}}}jd k	rZ|}j| }j| }|||fS )Nr   )rJ   )r   whererN   r:   Z_visitedrI   Z_distance_correction_vertex_order)c1c2rE   rF   r   r   r   )component_idsr=   rG   rJ   r$   r%   new_edge   s     



zconnect_graph.<locals>.new_edgethreads)n_jobsZpreferc                 3   s"   | ]\}}t  ||V  qd S )N)joblibZdelayed)r#   rY   rZ   )r\   r$   r%   	<genexpr>   s   z connect_graph.<locals>.<genexpr>r   )	r>   r   ZtolilrX   r_   ZParallelr   r(   rS   )
graphr=   rJ   r^   Zn_componentsr3   Z	new_edgesr   r   r   r$   )r[   r=   r\   rG   rJ   r%   connect_graph   s    
rb   )r?   r   )r?   N)r;   numpyr   r+   Zscipy.sparser   Zscipy.sparse.csgraphr   	itertoolsr   Zpynndescent.distancesZ	distancesr9   r_   Zpynndescent.utilsr   r   r   r   r	   r
   Zfinfor    ZepsrO   r>   rN   rV   rb   r$   r$   r$   r%   <module>   s    	j  
-